PaperPlayer biorxiv bioinformatics

Audio versions of bioRxiv and medRxiv paper abstracts

Episodes

Total: 1953

ESQmodel: biologically informed evaluation of 2-D cell segmentation quality in multiplexed tissue images
2023/7/11

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.06.547438v1?rss=1 Authors: Lee

Position-Specific Enrichment Ratio Matrix scores predict antibody variant properties from deep sequencing data
2023/7/11

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.10.548448v1?rss=1 Authors: Smi

A workflow combining single-cell CRISPRi screening and a supervised autoencoder neural network to detect subtle transcriptomic perturbations induced by lncRNA Knock-Down
2023/7/11

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.11.548494v1?rss=1 Authors: Tru

Utility of language model and physics-based approaches in modifying MHC Class-I immune-visibility for the design of vaccines and therapeutics
2023/7/11

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.10.548300v1?rss=1 Authors: Gas

ARCTIC-3D: Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
2023/7/11

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.10.548477v1?rss=1 Authors: Giu

kGWASflow: a modular, flexible, and reproducible Snakemake workflow for k-mers-based GWAS
2023/7/11

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.10.548365v1?rss=1 Authors: Cor

Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment
2023/7/11

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.10.548264v1?rss=1 Authors: Dia

Petascale Homology Search for Structure Prediction
2023/7/11

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.10.548308v1?rss=1 Authors: Lee

A divide and conquer approach (DACA) to predict high fidelity structure of large multidomain protein BRWD1
2023/7/11

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.10.548240v1?rss=1 Authors: Mon

Studies on the selectivity of the SARS-CoV-2 papain-like protease reveal the importance of the P2' proline of the viral polyprotein
2023/7/11

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.11.548309v1?rss=1 Authors: Cha

Self-supervised Benchmarking for scRNAseq Clustering
2023/7/10

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.07.548158v1?rss=1 Authors: Tyl

Pasa: Leverage population pangenome graph to scaffold prokaryote genome assemblies.
2023/7/10

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.09.548288v1?rss=1 Authors: Do,

ENTRAIN: integrating trajectory inference and gene regulatory networks with spatial data to co-localize the receptor-ligand interactions that specify cell fate
2023/7/10

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.09.548284v1?rss=1 Authors: Kya

Quantifying Cell-State Densities in Single-Cell Phenotypic Landscapes using Mellon
2023/7/10

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.09.548272v1?rss=1 Authors: Ott

Prediction of Alzheimer's Disease from Single Cell Transcriptomics Using Deep Learning
2023/7/10

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.07.548171v1?rss=1 Authors: Sri

Spatial pattern and differential expression analysis with spatial transcriptomic data
2023/7/9

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.06.547967v1?rss=1 Authors: Cai

Indexing and searching petabyte-scale nucleotide resources
2023/7/9

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.09.547343v1?rss=1 Authors: Shi

A microRNA-based Johne's disease diagnostic predictive system: preliminary results
2023/7/9

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.07.548088v1?rss=1 Authors: Cap

Efficient High-Quality Metagenome Assembly from Long Accurate Reads using Minimizer-space de Bruijn Graphs
2023/7/8

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.07.548136v1?rss=1 Authors: Ben

Mass2SMILES: deep learning based fast prediction of structures and functional groups directly from high-resolution MS/MS spectra.
2023/7/8

Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2023.07.06.547963v1?rss=1 Authors: Els